The build-up of osmotic stress responses within the growing root apex using kinematics and RNA-sequencing.
Identifieur interne : 001634 ( Main/Exploration ); précédent : 001633; suivant : 001635The build-up of osmotic stress responses within the growing root apex using kinematics and RNA-sequencing.
Auteurs : Mathilde Royer [France] ; David Cohen [France] ; Nathalie Aubry [France] ; Vera Vendramin [Italie] ; Simone Scalabrin [Italie] ; Federica Cattonaro [Italie] ; Marie-Béatrice Bogeat-Triboulot [France] ; Irène Hummel [France]Source :
- Journal of experimental botany [ 1460-2431 ] ; 2016.
Descripteurs français
- KwdFr :
- Analyse de séquence d'ARN (MeSH), Arabidopsis (croissance et développement), Arabidopsis (métabolisme), Arabidopsis (physiologie), Coiffe racinaire (croissance et développement), Coiffe racinaire (métabolisme), Coiffe racinaire (physiologie), Phénomènes biomécaniques (physiologie), Pression osmotique (physiologie), Régulation de l'expression des gènes au cours du développement (génétique), Régulation de l'expression des gènes au cours du développement (physiologie), Régulation de l'expression des gènes végétaux (génétique), Régulation de l'expression des gènes végétaux (physiologie), Séquençage par oligonucléotides en batterie (MeSH), Transduction du signal (physiologie).
- MESH :
- croissance et développement : Arabidopsis, Coiffe racinaire.
- génétique : Régulation de l'expression des gènes au cours du développement, Régulation de l'expression des gènes végétaux.
- métabolisme : Arabidopsis, Coiffe racinaire.
- physiologie : Arabidopsis, Coiffe racinaire, Phénomènes biomécaniques, Pression osmotique, Régulation de l'expression des gènes au cours du développement, Régulation de l'expression des gènes végétaux, Transduction du signal.
- Analyse de séquence d'ARN, Séquençage par oligonucléotides en batterie.
English descriptors
- KwdEn :
- Arabidopsis (growth & development), Arabidopsis (metabolism), Arabidopsis (physiology), Biomechanical Phenomena (physiology), Gene Expression Regulation, Developmental (genetics), Gene Expression Regulation, Developmental (physiology), Gene Expression Regulation, Plant (genetics), Gene Expression Regulation, Plant (physiology), Oligonucleotide Array Sequence Analysis (MeSH), Osmotic Pressure (physiology), Plant Root Cap (growth & development), Plant Root Cap (metabolism), Plant Root Cap (physiology), Sequence Analysis, RNA (MeSH), Signal Transduction (physiology).
- MESH :
- genetics : Gene Expression Regulation, Developmental, Gene Expression Regulation, Plant.
- growth & development : Arabidopsis, Plant Root Cap.
- metabolism : Arabidopsis, Plant Root Cap.
- physiology : Arabidopsis, Biomechanical Phenomena, Gene Expression Regulation, Developmental, Gene Expression Regulation, Plant, Osmotic Pressure, Plant Root Cap, Signal Transduction.
- Oligonucleotide Array Sequence Analysis, Sequence Analysis, RNA.
Abstract
Molecular regulation of growth must include spatial and temporal coupling of cell production and cell expansion. The underlying mechanisms, especially under environmental challenge, remain obscure. Spatial patterns of cell processes make the root apex well suited to deciphering stress signaling pathways, and to investigating both processes. Kinematics and RNA-sequencing were used to analyze the immediate growth response of hydroponically grown Populus nigra cuttings submitted to osmotic stress. About 7400 genes and unannotated transcriptionally active regions were differentially expressed between the division and elongation zones. Following the onset of stress, growth decreased sharply, probably due to mechanical effects, before recovering partially. Stress impaired cell expansion over the apex, progressively shortened the elongation zone, and reduced the cell production rate. Changes in gene expression revealed that growth reduction was mediated by a shift in hormone homeostasis. Osmotic stress rapidly elicited auxin, ethylene, and abscisic acid. When growth restabilized, transcriptome remodeling became complex and zone specific, with the deployment of hormone signaling cascades, transcriptional regulators, and stress-responsive genes. Most transcriptional regulations fit growth reduction, but stress also promoted expression of some growth effectors, including aquaporins and expansins Together, osmotic stress interfered with growth by activating regulatory proteins rather than by repressing the machinery of expansive growth.
DOI: 10.1093/jxb/erw350
PubMed: 27702994
PubMed Central: PMC5100013
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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type="university">Université de Lorraine</orgName></affiliation></author><author><name sortKey="Aubry, Nathalie" sort="Aubry, Nathalie" uniqKey="Aubry N" first="Nathalie" last="Aubry">Nathalie Aubry</name><affiliation wicri:level="4"><nlm:affiliation>UMR EEF, INRA, Université de Lorraine, 54280 Champenoux, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>UMR EEF, INRA, Université de Lorraine, 54280 Champenoux</wicri:regionArea><placeName><region type="region" nuts="2">Grand Est</region><region type="old region" nuts="2">Lorraine (région)</region><settlement type="city">Champenoux</settlement></placeName><orgName type="university">Université de Lorraine</orgName></affiliation></author><author><name sortKey="Vendramin, Vera" sort="Vendramin, Vera" uniqKey="Vendramin V" first="Vera" last="Vendramin">Vera Vendramin</name><affiliation wicri:level="1"><nlm:affiliation>IGA Technology Services, I-33100 Udine, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>IGA Technology Services, I-33100 Udine</wicri:regionArea><wicri:noRegion>I-33100 Udine</wicri:noRegion></affiliation></author><author><name sortKey="Scalabrin, Simone" sort="Scalabrin, Simone" uniqKey="Scalabrin S" first="Simone" last="Scalabrin">Simone Scalabrin</name><affiliation wicri:level="1"><nlm:affiliation>IGA Technology Services, I-33100 Udine, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>IGA Technology Services, I-33100 Udine</wicri:regionArea><wicri:noRegion>I-33100 Udine</wicri:noRegion></affiliation></author><author><name sortKey="Cattonaro, Federica" sort="Cattonaro, Federica" uniqKey="Cattonaro F" first="Federica" last="Cattonaro">Federica Cattonaro</name><affiliation wicri:level="1"><nlm:affiliation>IGA Technology Services, I-33100 Udine, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>IGA Technology Services, I-33100 Udine</wicri:regionArea><wicri:noRegion>I-33100 Udine</wicri:noRegion></affiliation></author><author><name sortKey="Bogeat Triboulot, Marie Beatrice" sort="Bogeat Triboulot, Marie Beatrice" uniqKey="Bogeat Triboulot M" first="Marie-Béatrice" last="Bogeat-Triboulot">Marie-Béatrice Bogeat-Triboulot</name><affiliation wicri:level="4"><nlm:affiliation>UMR EEF, INRA, Université de Lorraine, 54280 Champenoux, France triboulo@nancy.inra.fr.</nlm:affiliation><country wicri:rule="url">France</country><wicri:regionArea>UMR EEF, INRA, Université de Lorraine, 54280 Champenoux</wicri:regionArea><placeName><region type="region" nuts="2">Grand Est</region><region type="old region" nuts="2">Lorraine (région)</region><settlement type="city">Champenoux</settlement></placeName><orgName type="university">Université de Lorraine</orgName></affiliation></author><author><name sortKey="Hummel, Irene" sort="Hummel, Irene" uniqKey="Hummel I" first="Irène" last="Hummel">Irène Hummel</name><affiliation wicri:level="4"><nlm:affiliation>UMR EEF, INRA, Université de Lorraine, 54280 Champenoux, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>UMR EEF, INRA, Université de Lorraine, 54280 Champenoux</wicri:regionArea><placeName><region type="region" nuts="2">Grand Est</region><region type="old region" nuts="2">Lorraine (région)</region><settlement type="city">Champenoux</settlement></placeName><orgName type="university">Université de Lorraine</orgName></affiliation></author></analytic><series><title level="j">Journal of experimental botany</title><idno type="eISSN">1460-2431</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Arabidopsis (growth & development)</term><term>Arabidopsis (metabolism)</term><term>Arabidopsis (physiology)</term><term>Biomechanical Phenomena (physiology)</term><term>Gene Expression Regulation, Developmental (genetics)</term><term>Gene Expression Regulation, Developmental (physiology)</term><term>Gene Expression Regulation, Plant (genetics)</term><term>Gene Expression Regulation, Plant (physiology)</term><term>Oligonucleotide Array Sequence Analysis (MeSH)</term><term>Osmotic Pressure (physiology)</term><term>Plant Root Cap (growth & development)</term><term>Plant Root Cap (metabolism)</term><term>Plant Root Cap (physiology)</term><term>Sequence Analysis, RNA (MeSH)</term><term>Signal Transduction (physiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ARN (MeSH)</term><term>Arabidopsis (croissance et développement)</term><term>Arabidopsis (métabolisme)</term><term>Arabidopsis (physiologie)</term><term>Coiffe racinaire (croissance et développement)</term><term>Coiffe racinaire (métabolisme)</term><term>Coiffe racinaire (physiologie)</term><term>Phénomènes biomécaniques (physiologie)</term><term>Pression osmotique (physiologie)</term><term>Régulation de l'expression des gènes au cours du développement (génétique)</term><term>Régulation de l'expression des gènes au cours du développement (physiologie)</term><term>Régulation de l'expression des gènes végétaux (génétique)</term><term>Régulation de l'expression des gènes végétaux (physiologie)</term><term>Séquençage par oligonucléotides en batterie (MeSH)</term><term>Transduction du signal (physiologie)</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Arabidopsis</term><term>Coiffe racinaire</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Gene Expression Regulation, Developmental</term><term>Gene Expression Regulation, Plant</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Arabidopsis</term><term>Plant Root Cap</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Régulation de l'expression des gènes au cours du développement</term><term>Régulation de l'expression des gènes végétaux</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Arabidopsis</term><term>Plant Root Cap</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Arabidopsis</term><term>Coiffe racinaire</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Arabidopsis</term><term>Coiffe racinaire</term><term>Phénomènes biomécaniques</term><term>Pression osmotique</term><term>Régulation de l'expression des gènes au cours du développement</term><term>Régulation de l'expression des gènes végétaux</term><term>Transduction du signal</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Arabidopsis</term><term>Biomechanical Phenomena</term><term>Gene Expression Regulation, Developmental</term><term>Gene Expression Regulation, Plant</term><term>Osmotic Pressure</term><term>Plant Root Cap</term><term>Signal Transduction</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Oligonucleotide Array Sequence Analysis</term><term>Sequence Analysis, RNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ARN</term><term>Séquençage par oligonucléotides en batterie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Molecular regulation of growth must include spatial and temporal coupling of cell production and cell expansion. The underlying mechanisms, especially under environmental challenge, remain obscure. Spatial patterns of cell processes make the root apex well suited to deciphering stress signaling pathways, and to investigating both processes. Kinematics and RNA-sequencing were used to analyze the immediate growth response of hydroponically grown Populus nigra cuttings submitted to osmotic stress. About 7400 genes and unannotated transcriptionally active regions were differentially expressed between the division and elongation zones. Following the onset of stress, growth decreased sharply, probably due to mechanical effects, before recovering partially. Stress impaired cell expansion over the apex, progressively shortened the elongation zone, and reduced the cell production rate. Changes in gene expression revealed that growth reduction was mediated by a shift in hormone homeostasis. Osmotic stress rapidly elicited auxin, ethylene, and abscisic acid. When growth restabilized, transcriptome remodeling became complex and zone specific, with the deployment of hormone signaling cascades, transcriptional regulators, and stress-responsive genes. Most transcriptional regulations fit growth reduction, but stress also promoted expression of some growth effectors, including aquaporins and expansins Together, osmotic stress interfered with growth by activating regulatory proteins rather than by repressing the machinery of expansive growth.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">27702994</PMID><DateCompleted><Year>2017</Year><Month>11</Month><Day>13</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1460-2431</ISSN><JournalIssue CitedMedium="Internet"><Volume>67</Volume><Issue>21</Issue><PubDate><Year>2016</Year><Month>11</Month></PubDate></JournalIssue><Title>Journal of experimental botany</Title><ISOAbbreviation>J Exp Bot</ISOAbbreviation></Journal><ArticleTitle>The build-up of osmotic stress responses within the growing root apex using kinematics and RNA-sequencing.</ArticleTitle><Pagination><MedlinePgn>5961-5973</MedlinePgn></Pagination><Abstract><AbstractText>Molecular regulation of growth must include spatial and temporal coupling of cell production and cell expansion. The underlying mechanisms, especially under environmental challenge, remain obscure. Spatial patterns of cell processes make the root apex well suited to deciphering stress signaling pathways, and to investigating both processes. Kinematics and RNA-sequencing were used to analyze the immediate growth response of hydroponically grown Populus nigra cuttings submitted to osmotic stress. About 7400 genes and unannotated transcriptionally active regions were differentially expressed between the division and elongation zones. Following the onset of stress, growth decreased sharply, probably due to mechanical effects, before recovering partially. Stress impaired cell expansion over the apex, progressively shortened the elongation zone, and reduced the cell production rate. Changes in gene expression revealed that growth reduction was mediated by a shift in hormone homeostasis. Osmotic stress rapidly elicited auxin, ethylene, and abscisic acid. When growth restabilized, transcriptome remodeling became complex and zone specific, with the deployment of hormone signaling cascades, transcriptional regulators, and stress-responsive genes. Most transcriptional regulations fit growth reduction, but stress also promoted expression of some growth effectors, including aquaporins and expansins Together, osmotic stress interfered with growth by activating regulatory proteins rather than by repressing the machinery of expansive growth.</AbstractText><CopyrightInformation>© The Author 2016. Published by Oxford University Press on behalf of the Society for Experimental Biology.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Royer</LastName><ForeName>Mathilde</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>UMR EEF, INRA, Université de Lorraine, 54280 Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cohen</LastName><ForeName>David</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>UMR EEF, INRA, Université de Lorraine, 54280 Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Aubry</LastName><ForeName>Nathalie</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>UMR EEF, INRA, Université de Lorraine, 54280 Champenoux, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vendramin</LastName><ForeName>Vera</ForeName><Initials>V</Initials><AffiliationInfo><Affiliation>IGA Technology Services, I-33100 Udine, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Scalabrin</LastName><ForeName>Simone</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>IGA Technology Services, I-33100 Udine, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cattonaro</LastName><ForeName>Federica</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>IGA Technology Services, I-33100 Udine, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bogeat-Triboulot</LastName><ForeName>Marie-Béatrice</ForeName><Initials>MB</Initials><AffiliationInfo><Affiliation>UMR EEF, INRA, Université de Lorraine, 54280 Champenoux, France triboulo@nancy.inra.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hummel</LastName><ForeName>Irène</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>UMR EEF, INRA, Université de Lorraine, 54280 Champenoux, France.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>10</Month><Day>04</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>J Exp Bot</MedlineTA><NlmUniqueID>9882906</NlmUniqueID><ISSNLinking>0022-0957</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D017360" MajorTopicYN="N">Arabidopsis</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001696" MajorTopicYN="N">Biomechanical Phenomena</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018507" MajorTopicYN="N">Gene Expression Regulation, Developmental</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020411" MajorTopicYN="N">Oligonucleotide Array Sequence Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009997" MajorTopicYN="N">Osmotic Pressure</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018518" 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